Hi,
I am far from being an expert on aquarium filters, but if it was me, I would leave the Old Bio Wheels set up and functioning for a few weeks. Bio wheels, I think, work on the premise of continual exposure to water and air, wet-dry, as they are not completely submerged. In most canisters they are, except for a couple by Eheim, ie., model 2227, that incorporates something similar by literally "flushing" the bacterial colonies with air and water.
It is a different technology and perhaps the colonized bacteria might need time to adjust to the different environment.
Good Luck!
Judy and Toad