I'm not sure if my advice will be correct but i'll have a pop (someone else will definitely know).
If it is very small bubbles take out the pre-filter and replace with floss, also remove the carbon, you only really need this to remove nasties or any meds you might have used, then replace the carbon with another tray of bio-max, remember to add some filter start.
I think the floss should reduce the small bubbles.
Did you buy the filter recently ? It takes a while for air bubbles to work their way through the filter.
The bubbles should disappear in time.