Of course, the filter will still work without any mechanical filtration, but remember just because you have another filter working with mechanical filtration, the filter without the mechanical filtration will still pick up solid waste. I can see your way of thinking and it is certainly a very good idea, but I would advise you to put a little bit of mechanical filtration in the canister filter, it will just save you a little bit of work when you come to clean the filter. To be quite honest, it won't take up much room but it will benefit you in the long run.